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Agilent Extraction 11.5 or 12.0 to 12.1 Microarray Migration Utility PDF
Summary of Content for Agilent Extraction 11.5 or 12.0 to 12.1 Microarray Migration Utility PDF
Feature Extraction 11.5 or 12.0 to 12.1
Migration Utility
For Research Use Only. Not for use in diagnostic procedures.
Installing the Migration Utility 2
Running the Migration Utility 3
To export data from a previous version of Feature Extraction (11.5 or
12.0) 4
To import data to Feature Extraction 12.1 5
Troubleshooting 8
To display the log file 8
Error messages 8
The Feature Extraction Migration Utility provides a way to move grid templates, protocols, and metric sets from Feature Extraction 11.5 or 12.0 to Feature Extraction 12.1. This guide contains information on how to use the Migration Utility for this purpose.
Agilent Technologies
Installing the Migration Utility
Installing the Migration Utility
You can use the Migration Utility to migrate data for the following scenarios:
Feature Extraction 11.5 or 12.0 is installed on a different computer than Feature Extraction 12.1. In this scenario, you need to install the Migration Utility software on both computers.
Feature Extraction 11.5 or 12.0 is installed on the same computer as Feature Extraction 12.1. In this scenario, only one copy of the Migration Utility software is required. However, because the previous version of Feature Extraction cannot simultaneously co- exist on the same computer as Feature Extraction 12.1, you must first export data from the previous version of Feature Extraction, then uninstall Feature Extraction. You can then install Feature Extraction 12.1 and import the data using the Migration Utility software.
1 Download the MigrationUtility.zip file from www.agilent.com/genomics/MigrationUtility.
2 Unzip the MigrationUtility.zip file to a location where you want to install the Migration Utility software.
A Migration_Utility folder is created that contains the Migration Utility.
NOTE It is not necessary to close Feature Extraction while you run the Migration Utility. However,
make sure that you are not extracting data.
Close the Migration Utility before extracting data in Feature Extraction.
NOTE If the previous version of Feature Extraction is installed on a different computer than
Feature Extraction 12.1, then you need to install the Migration Utility software on both
computers.
2 Agilent Feature Extraction Migration Utility
Running the Migration Utility
Running the Migration Utility
Complete migration of data from a previous version of Feature Extraction (11.5 or 12.0) to Feature Extraction 12.1 is performed by the program in two steps. First, the grid templates, protocols, and metric sets are exported from the previous version of Feature Extraction. Then, the exported data are imported into Feature Extraction 12.1.
If the previous version of Feature Extraction is installed on a different computer than Feature Extraction 12.1, first run the Migration Utility on the computer with the previous version of Feature Extraction to export the data. Then, run the Migration Utility on the computer with Feature Extraction 12.1 to import the data.
If the previous version of Feature Extraction is currently installed on the same computer where you want to install Feature Extraction 12.1, first run the Migration Utility in the previous version to export the data. Then, uninstall the previous version of Feature Extraction and install Feature Extraction 12.1. Finally, run the Migration Utility in Feature Extraction 12.1 to import the data.
Do not run extractions or perform export, import, or delete operations within
Feature Extraction while the Migration Utility is exporting or importing data.
NOTE If you are migrating data from one computer to another, make sure that the computer with
Feature Extraction 12.1 has access to the folder where you are exporting the data. If not,
after you export the data, you must copy the Migration Utility Output folder from the
computer with the previous version of Feature Extraction to the Migration Utility
installation folder on the computer with Feature Extraction 12.1.
CAUTION
Agilent Feature Extraction Migration Utility 3
To export data from a previous version of Feature Extraction (11.5 or 12.0)
To export data from a previous version of Feature Extraction (11.5 or 12.0) 1 On the computer where the previous version of Feature Extraction is
installed, browse to the folder where you installed the Migration Utility software, and start the MigrationUtility.exe program.
The MigrationUtility dialog box opens. When the program starts, it creates Output and Logs folders in the Migration Utility installation folder.
The program recognizes that Feature Extraction 11.5 or 12.0 software is installed, and by default selects to export grid templates, protocols, and metric sets.
Figure 1 Migration Utility dialog box
2 (Optional) Clear the boxes for data you do not want to migrate (Grid Templates, Protocols, Metric Sets).
3 By default, the program exports the data to the
a Next to the Data Location field, click Browse.
b In the Browse for Folder dialog box, browse to the folder where you want to export the data. Click the folder to select it.
OR
4 Agilent Feature Extraction Migration Utility
To import data to Feature Extraction 12.1
To create a folder, browse to a location and click Make New Folder, then type the name of the folder where you want to export the data.
c Click OK.
4 Click Start.
The program exports the selected data from the previous version of Feature Extraction. During data export, a progress bar appears in the dialog box.
5 When data export is complete, a message box opens. Click OK.
Exported data is saved in the designated Output folder, in separate folders: GridTemplates, MetricSets, and Protocols.
6 If Feature Extraction 12.1 is to be installed on the same computer as the previous version of Feature Extraction, uninstall the previous version and install version 12.1 before continuing.
To import data to Feature Extraction 12.1 1 On the computer where Feature Extraction 12.1 is installed, browse to
the folder where you installed the Migration Utility software, and double- click the MigrationUtility.exe program.
The MigrationUtility dialog box opens. The program recognizes that Feature Extraction 12.1 software is installed, and by default selects to import grid templates, protocols, and metric sets.
2 (Optional) clear the boxes for data you do not want to migrate.
NOTE Make sure you have write permissions in the Output folder location.
NOTE Make sure you have write permissions in the Output folder before you start the
Import operation.
Agilent Feature Extraction Migration Utility 5
To import data to Feature Extraction 12.1
3 By default, the program imports the data from the
a Next to the Data Location field, click Browse.
b In the Browse for Folder dialog box, browse to and select the folder that contains the Output subfolder to which data was exported.
Figure 2 Browse For Folder dialog box select the folder containing the Output sub-
folder
If not all files are imported, check the log file for further information. See To display the log
file on page 8.
4 Click Start.
The program imports the selected data from the Import Location folder. During data import, the progress is displayed in the MigrationUtility dialog box.
5 When import is complete, a message appears. Click OK.
NOTE
6 Agilent Feature Extraction Migration Utility
To import data to Feature Extraction 12.1
If you need to stop the data migration process for any reason, click Abort. In the message
box that opens, click Yes to confirm. The data migration does not abort until you click Yes.
If data migration is stopped during data export, the export operation stops and the current
output file is not saved in the Output folder. All files exported before the abort operation
remain in the Output folder. No further files are exported.
If data migration is stopped during data import, the current file import is completed, but no
additional files are imported. Data imported before the abort operation are available in
Feature Extraction 12.1.
NOTE
Agilent Feature Extraction Migration Utility 7
Troubleshooting
Troubleshooting
During data migration, the status of each data migration operation is saved in a log file. The log file is useful in troubleshooting.
To display the log file 1 Browse to the Logs folder in the Migration Utility export/import
location. By default, this is
2 Using a text editor, open the Logs.txt file.
The Migration Utility log file is displayed.
Figure 3 Migration Utility log file
Error messages When a problem occurs during data migration, a message is displayed that provides information about what happened. The following table describes possible messages and explanations.
8 Agilent Feature Extraction Migration Utility
Error messages
Table 1 Error messages
Problem Message displayed Resolution
Feature Extraction (v 11.5 or 12.0) is
not installed on the system.
The Migration Utility requires Feature
Extraction Software (11.5 or 12.0) to be
installed on the system. Please check if
one of these versions are installed on the
system.
Check log file for details. Check that
Feature Extraction 11.5 or 12.0 is
installed on the computer.
Incorrect connection parameters
provided.
Error in connecting to FE database.
Please check log file at <
Migration_utility_executable_path
>\Logs for details.
Verify that the database service is
running on the computer. Also, check
that the database is properly installed
and accessible through Feature
Extraction.
Incorrect export folder path. Error in creating Grid Template/Protocol/
Metric Set XML. Please check log file at
\Logs for details.
Check that the export folder is located
in the provided path. Also check if the
user has access rights to write the file
in that path. Check the log file for more
details.
Incorrect import folder path. Error in importing Grid
Template/Protocol/ Metric Set XML.
Please check log file at
\Logs for details.
Check that the import folder is located
in the provided path and if user has
read access rights. Also check that the
GridTemplates, Protocols, and
MetricSets folders are present at this
location. Check log file for more
information.
Not enough space. Not enough disk space to generate Grid
Template XML.
Check disk space available at the
destination folder drive and create
some free disk space.
One instance of the utility is already
running on the system and user tries
to launch another instance
Migration Utility is already running on this
computer. Only one instance of Migration
Utility is allowed per computer.
Only one instance of the utility can run
at a time. Do not start the Migration
Utility while it is already running.
Not enough physical memory left to
migrate large data files.
Not enough storage is available to
process this command.
Close all unnecessary programs and
try again. Make sure the computer
meets the memory requirements for
Feature Extraction.
Agilent Feature Extraction Migration Utility 9
Error messages
Tried to import a design that was
previously imported.
Either grid template
Installation_folder>\Migration_Utility\
Output\GridTemplates\
xml already exists or unable to write to
Temp folder while importing.
Grid template already exists in
database.
Table 1 Error messages (continued)
Problem Message displayed Resolution
10 Agilent Feature Extraction Migration Utility
www.agilent.com
Agilent Technologies, Inc. 2018
Revision A0, January 2018
*G4460-90059* G4460-90059 <
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